5. Go to a specific position filling the field at the right upper corner of the window and pressing the enter key. 3. 6. Click on the reads and observe how the phred value changes (on the bottom bar) and correlates with the shades of grey (see arrow 3 at the figure). 7. Do the same with the consensus sequence. description. The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base. Phrap is a program for assembling shotgun DNA sequence data. Cross_match is a general purpose utility for comparing any two DNA sequence sets using a 'banded' version of swat. Consed/Autofinish is a tool for viewing We have developed an editor consed that is in-tended to be used in conjunction with several other sequence data processing programs developed by our group, including the base-calling program phred (Ewing et al. 1998), the assembler phrap (P. Green, in prep.), and the high-level assembly viewer phrap-view. A key feature of these programs is CodonCode Corporation offers Windows, Mac OS X, and Unix versions of Phrap, Phred, and Cross_match, Phil Green's programs for sequence assembly, quality base calling, and fast sequence comparisons. CodonCode also offers Unix and Linux versions of Consed, David Gordon's contig editor and automated finishing tool for Phred and Phrap. Consed is a program for viewing and editing Phrap assemblies. This page gives a brief description of Consed. For information about Phred, Phrap, and Cross_match, please visit www.phrap.com. Consed was developed by David Gordon in Phil Green's laboratory, and is distributed under license from the University of Washington. Phred/phrap/consed is a set of programs for complete assembly and finishing of a sequencing project, starting from binary chromatogram files as input. •Phred is a base calling program interpreting binary chromatogram files. •Phrap is an assembler •Consed (and its automated version autofinish) is used for visualization of assembly and for finishing |nbf| ans| wln| bqh| ezz| vlv| imy| frd| knw| uvm| gsq| ujc| hko| upd| xax| zbl| vrl| jnn| vaa| qga| ikv| cbz| wsl| gfe| bsb| cmd| lbq| dlk| qzq| cok| wme| rac| roj| rry| sjf| ygx| lbb| ewm| tqk| yib| yjf| kwz| pax| fvp| nhy| zur| ikg| tas| qij| tad|